As it is well explained in Wikipedia. The Homography matrix given:
|h1 h2 h3|
|h4 h5 h6|
|h7 h8 h9|
It is used to express the relationship between a source point and a destination point and vis-versa.
You want to map src -> dst and therefore find the homography matrix using openCV function. Then :
dst.x = (src.x*h1+src.y*h2+h3 )/(src.x*h7+src.y*h8+h9);
dst.y = (src.x*h4+src.y*h5+h6 )/(src.x*h7+src.y*h8+h9);
The function is :
public static void cvFindHomography( IntPtr srcPoints, IntPtr dstPoints, IntPtr homography, HOMOGRAPHY_METHOD method, double ransacReprojThreshold, IntPtr mask )